In 2025, tracking work hours and paying for them should be part of a single, streamlined workflow — whether that’s through one tool or two tightly integrated ones.

Many teams still manage time tracking in one platform and payroll in another, often relying on spreadsheets, manual exports, or disconnected systems. This slows down payments, increases the risk of errors, and creates unnecessary overhead.

Fortunately, modern time tracking solutions now offer built-in payment features or native integrations with payroll systems. That means you can go from timesheet to payout — hourly or salaried — with minimal effort.

In this article, we’ll look at the best time tracking tools that also help you manage payments, compare their strengths, and highlight what to consider when choosing the right one for your team.

1. WebWork Time Tracker

Best for: Teams that want to track hours, automate salaries, and pay employees directly — all in one secure platform.

WebWork is a full-featured payroll time tracking system that helps you go from tracked hours to accurate payments with minimal manual work. Employees log time using WebWork’s desktop, web, mobile, or extension trackers. You can assign hourly rates or fixed weekly/monthly salaries, and the platform automatically generates payroll-ready timesheets.

For payments, WebWork offers direct integrations with:
✔ PayPal — send payments instantly without leaving the platform
✔ Stripe — pay team members directly from inside WebWork
✔ Bitwage — crypto payments

WebWork also connects to payroll platforms and global payment systems, including:
✔ Deel — automatic timesheet sync for global contractor payroll
✔ Payoneer WFM — export-ready reports for scheduled payouts
✔ Gusto, Wise — compatible with structured payroll exports or direct payments depending on integration.

Additional capabilities include:

• Hourly and fixed salary support

• Billable rates per employee or project

• Paid time off and overtime tracking

• Exportable payroll reports for Payoneer, Gusto, and more

• Timesheet approvals and visibility into hours and earnings

All payroll data is processed with GDPR, CCPA, and HIPAA-aligned practices, encrypted with SSL, and protected against unauthorized access — ensuring secure handling of both personal and financial information.

💡 One of the few platforms that supports both hourly and fixed salary payouts natively.

2. Hubstaff

Best for: Teams with freelancers or employees who want detailed time tracking and flexible payment options through integrations.

Hubstaff combines precise time tracking with built-in support for both hourly and fixed salary payments. Employees can track time via desktop, mobile, or browser extension, while managers get detailed reports on productivity, activity levels, app usage, and GPS locations.

For payroll, Hubstaff supports:

• Hourly payments based on tracked time

• Salaried (fixed) payments on a recurring schedule
  You can set up payments for each team member and connect with providers like:

You can set up payments for each team member and connect with providers like:

✔ PayPal

✔ Wise

✔ Gusto

✔ Bitwage

Hubstaff doesn’t process payments inside the app, but once integrated, it can automate payouts on your chosen schedule — whether based on hours or a fixed amount. You can also generate payroll reports and process payments manually if needed.

3. Clockify

Best for: Teams that want flexible, scalable time tracking with payroll reporting — but no built-in payment tools.

Clockify is a popular time tracking tool known for its generous free plan and clean interface. It lets teams track time manually or with a timer, assign hours to projects or clients, and apply billable rates to calculate what’s owed.

While Clockify doesn’t include built-in payroll or payment processing, you can:

• Assign hourly rates per team member

• Export timesheets and payroll reports

• Use tools like Zapier or the Clockify API to connect with external payroll platforms like Gusto or QuickBooks

That said, all payment-related actions — from calculating salaries to sending payouts — must be handled outside the platform.

💡 Clockify is best for teams that need flexible time tracking and payroll reporting, but don’t require built-in payments or automated payouts.

4. Jibble

Best for: Teams that need attendance-focused time tracking with exportable payroll data — but don’t require payment features.

Jibble is built around clock-in/clock-out workflows, with powerful features for tracking attendance, shifts, overtime, and facial recognition logins. It’s especially popular in industries where physical presence matters — like retail, manufacturing, and field teams.

You can assign hourly pay rates to employees and generate automated payroll reports showing total hours worked and gross pay. These reports can then be exported and uploaded to your payroll provider.

However, Jibble does not support built-in payments or direct payroll integrations. All actual payments must be handled separately.

💡 Jibble is ideal for shift-based teams that need accurate time tracking and attendance — but you’ll still need a separate platform to process payroll and send payments.

5. Time Doctor

Best for: Companies that need detailed monitoring with payroll exports and hourly payment support.

Time Doctor is a time tracking platform built with productivity and accountability in mind. It captures work activity with features like screenshots, app and website usage, idle time detection, and detailed productivity reports — making it especially useful for managing distributed or outsourced teams.

Time Doctor includes a payroll feature that lets you:

• Set hourly rates for each team member

• Automatically calculate payouts based on tracked time

• Export payroll data or process payments via integrations with:
  ✔ PayPal
  ✔ Wise
  ✔ Payoneer

You can approve timesheets and send payments directly from within the platform — but this is limited to hourly payments only. Time Doctor does not support fixed salary workflows, so teams with salaried employees will need another solution for that.

💡 Time Doctor is great for teams that prioritize visibility and need to pay contractors by the hour — but it isn’t built for salaried payroll automation.

Quick Comparison

What to Look for in a Time Tracker with Payments

Choosing the right tool for time tracking and payroll isn’t just about logging hours — it’s about how well the tool connects work to payment. Here’s what to evaluate:

• Flexible Pay Models
  Can it support both hourly rates and fixed salaries? You don’t want to force one structure for every team member.

• Integrated Payments
  Can you send payments directly from the platform, or do you need to export data to a third-party system?

• Global Capabilities
  Does it support multiple currencies, time zones, and local pay rules — especially if you work with international teams?

• Workflow Automation
  Can the platform reduce manual steps for payroll approval, calculation, and payouts?

• Clarity for the Team
  Will your employees or contractors be able to see what they earned and when they’re getting paid?

The best tools eliminate complexity — not just for managers, but for everyone involved.

Final Thoughts

Tracking time and running payroll don’t have to live in the same tool — but they should work together seamlessly. Whether you’re paying freelancers by the hour or employees on a fixed salary, the best systems ensure timesheets flow directly into payouts — with minimal manual effort.

WebWork Time Tracker stands out by offering both hourly and salaried workflows, along with the ability to pay employees and contractors directly through Stripe, PayPal, Wise, and Bitwage — right from inside the platform. For teams using global payroll systems like Payoneer WFM or Deel, WebWork also supports automated timesheet syncing, so everything stays connected.

If you’re managing a growing or distributed team, it’s worth using a platform that doesn’t just track time — but helps you close the loop with fast, integrated payments.